Revenge Of The Cold Machines by Junichi Fujisaku are three stories set in the Ghost In The Shell universe, sometime around the first part second season or just before it. The refugee problem is in the background, just starting to boil, and the Laughing Man case is talked about in one of the stories. The first story is about an assassin being hired to take out a member of Section 9. The second story focuses on the interaction between a police officer and a Tachikoma told from the point of view of the tank itself. The third deals with military cyberbodies in the wrong hands.
Yet as you read page after page you start to see the same names and realize all the stories are linked together. Like some episodes from the series these stories are not Stand Alone but part of a Complex single story. There are even links to the television episodes, if you look hard enough.